About the Core

IIGB Bioinformatics Core

  • Data analysis
    • RNA-seq, ChIP-seq
    • scRNA-seq
    • DNA-seq
    • Other
  • Project consultations
  • Method development
  • Daily (2-3PM)
  • In-person or via Zoom (by appt)
  • Calendly

OnDemand

Logging in to the server via OnDemand


You should receive an email with login information if you’ve never had an account on the HPCC. For those with an account already, you can use the same credentials to log into the server.

Open up your browser and type the following URL: https://ondemand.hpcc.ucr.edu

Note

Use the provided login credentials to log in to OnDemand. Then you’ll be ask for authentication password and two-factor validation with DUO.


After logging in, you’ll see the HPCC OnDemand Welcome Page

Requesting an Interactive Session

To request an interactive app, click on Interactive Apps and select the App of interest (e.g. RStudio Server).

You will see an app launch form. Fill in the following information:

Then click Launch and wait for resources to be gathered for your app.

Once the app is ready, click Connect to RStudio to launch the RStudio Server.

RStudio

Lets Get Started


Go to the GitHub repository https://github.com/bioinformatics-workshop

Select the workshop

Click on the <> Code button and copy the HTTPS URL

In the terminal tab in Rstudio (in the console section), type in git clone and paste the URL from github (see below as an example)

git clone https://github.com/bioinformatics-workshop/Intro-to-Tidyverse-2025.git

Now, you should have a clone of the workshop documents with scripts and html files to follow.